Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10254423	0.96[ASN][1000 genomes]
rs12705207	0.96[CEU][hapmap]
rs13234807	0.96[CEU][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs1465197	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1468141	1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2106503	0.82[MEX][hapmap]
rs2188491	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs2385234	1.00[ASN][1000 genomes]
rs2891724	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs4729993	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap]
rs4729994	0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs4729999	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4730000	1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[JPT][hapmap]
rs6465980	0.91[CEU][hapmap]
rs7777442	0.88[CEU][hapmap]
rs7787976	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs7787988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs7788386	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs7794488	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7800144	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs979522	0.96[CEU][hapmap];0.95[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4729996	ORAI2	cis	parietal	SCAN
rs4729996	CDHR3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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