Variant report

Variant	rs4730964
Chromosome Location	chr7:120224300-120224301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10226133	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1527650	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.94[EUR][1000 genomes]
rs17142838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17281865	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17347747	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41424845	0.85[GIH][hapmap]
rs58555874	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59156163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59575769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60150466	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73439878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73441843	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721419	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721426	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790895	0.85[GIH][hapmap]
rs7812111	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120220200-120227200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120220600-120224600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:120220800-120225200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:120220800-120226000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:120222000-120224600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:120223000-120224600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:120223200-120225200	Enhancers	HUVEC	blood vessel
8	chr7:120223400-120224600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:120223400-120224600	Enhancers	HMEC	breast
10	chr7:120223400-120224800	Enhancers	HSMM	muscle
11	chr7:120223400-120224800	Enhancers	NH-A	brain
12	chr7:120223600-120224400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:120223600-120224400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr7:120223600-120224600	Enhancers	HSMMtube	muscle
15	chr7:120223600-120224600	Enhancers	NHEK	skin
16	chr7:120223600-120224800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:120223600-120224800	Enhancers	Hela-S3	cervix
18	chr7:120223800-120224800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:120224000-120224400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:120224000-120224400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:120224000-120224600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:120224000-120224800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:120224000-120224800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:120224200-120224400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:120224200-120224600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr7:120224200-120224600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr7:120224200-120224600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr7:120224200-120224800	Enhancers	NHLF	lung
29	chr7:120224200-120225000	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links