Variant report

Variant	rs73721419
Chromosome Location	chr7:120190475-120190476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1527650	0.94[EUR][1000 genomes]
rs17142838	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17281865	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17347747	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730964	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58555874	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59156163	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59575769	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60150466	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73439878	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73441843	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73721426	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120188800-120191600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr7:120189200-120192200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:120189200-120193000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:120189400-120192200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:120189600-120191000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:120189600-120191800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:120189600-120192800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:120189800-120190600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr7:120189800-120192600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:120190000-120190600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:120190000-120190800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:120190000-120192800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:120190200-120191000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:120190200-120191200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:120190400-120191000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:120190400-120191000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:120190400-120191000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:120190400-120191000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:120190400-120191000	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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