Variant report
| Variant | rs4731142 |
|---|---|
| Chromosome Location | chr7:79660155-79660156 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10228945 | 0.89[ASN][1000 genomes] |
| rs10230913 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10250102 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10268369 | 0.91[ASN][1000 genomes] |
| rs10271308 | 0.81[ASN][1000 genomes] |
| rs10275775 | 0.81[ASN][1000 genomes] |
| rs10279480 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1034722 | 0.82[ASN][1000 genomes] |
| rs1074944 | 0.82[ASN][1000 genomes] |
| rs1319268 | 0.91[ASN][1000 genomes] |
| rs2007845 | 0.82[ASN][1000 genomes] |
| rs2107269 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2189450 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4727990 | 0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6466888 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6954322 | 0.80[ASN][1000 genomes] |
| rs6966542 | 0.82[ASN][1000 genomes] |
| rs6975329 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6975657 | 0.86[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs728459 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs728460 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7778809 | 0.84[ASN][1000 genomes] |
| rs7795034 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7805603 | 0.82[ASN][1000 genomes] |
| rs970112 | 0.82[ASN][1000 genomes] |
| rs970113 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv607676 | chr7:79636682-79687844 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv818527 | chr7:79636682-79687844 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv607677 | chr7:79636682-79693050 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv470344 | chr7:79659914-79701003 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79656800-79662400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
