Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10228945	0.88[ASN][1000 genomes]
rs10230913	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10250102	0.85[ASN][1000 genomes]
rs10268369	0.85[ASN][1000 genomes]
rs10271308	0.81[ASN][1000 genomes]
rs10275775	0.81[ASN][1000 genomes]
rs10279480	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1034722	0.82[ASN][1000 genomes]
rs1319268	0.85[ASN][1000 genomes]
rs2107269	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2189450	0.85[ASN][1000 genomes]
rs4727990	0.85[ASN][1000 genomes]
rs4731142	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6466888	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6954322	0.81[ASN][1000 genomes]
rs6975329	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6975657	0.84[ASN][1000 genomes]
rs728459	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7795034	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7805603	0.82[ASN][1000 genomes]
rs886364	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs728460	FGL2	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79643400-79644600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:79643800-79644600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:79644000-79644600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:79644000-79648000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:79644000-79648600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:79644200-79648200	Weak transcription	Osteobl	bone
7	chr7:79644400-79647600	Weak transcription	Dnd41	blood
8	chr7:79644400-79648400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:79644400-79648800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search: