Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10228945	0.89[ASN][1000 genomes]
rs10230913	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10250102	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10268369	0.91[ASN][1000 genomes]
rs10271308	0.81[ASN][1000 genomes]
rs10275775	0.81[ASN][1000 genomes]
rs10279480	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1034722	0.82[ASN][1000 genomes]
rs1074944	0.82[ASN][1000 genomes]
rs1319268	0.91[ASN][1000 genomes]
rs2007845	0.82[ASN][1000 genomes]
rs2107269	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2189450	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4727990	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4731142	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954322	0.80[ASN][1000 genomes]
rs6966542	0.82[ASN][1000 genomes]
rs6975329	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6975657	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs728459	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs728460	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7778809	0.84[ASN][1000 genomes]
rs7795034	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7805603	0.82[ASN][1000 genomes]
rs886364	0.91[CHB][hapmap]
rs970112	0.82[ASN][1000 genomes]
rs970113	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6466888	FGL2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79656200-79657600	Enhancers	Fetal Heart	heart
2	chr7:79656800-79657600	Enhancers	Hela-S3	cervix
3	chr7:79656800-79662400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:79657000-79657400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:79657000-79657400	Enhancers	Fetal Lung	lung
6	chr7:79657000-79657400	Enhancers	NHEK	skin
7	chr7:79657200-79657400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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