Variant report

Variant	rs4731407
Chromosome Location	chr7:127804578-127804579
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127789193..127791588-chr7:127802613..127804788,2	MCF-7	breast:
2	chr7:127803231..127805511-chr7:127810379..127811917,2	MCF-7	breast:
3	chr7:127795407..127797844-chr7:127804124..127806542,3	MCF-7	breast:
4	chr7:127799537..127801607-chr7:127803464..127805695,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10216248	0.94[ASN][1000 genomes]
rs10269842	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12155383	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155392	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56340588	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62484033	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62484034	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62484035	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896181	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv33413	chr7:127800064-127929303	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	esv989073	chr7:127800713-127812327	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127803000-127806600	Enhancers	HMEC	breast
2	chr7:127803200-127804600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:127803200-127805000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:127803200-127806000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:127803400-127804600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:127803600-127805200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
7	chr7:127803600-127805400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:127803600-127805400	Enhancers	NH-A	brain
9	chr7:127803600-127805800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr7:127803600-127805800	Enhancers	Hela-S3	cervix
11	chr7:127803600-127806000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr7:127803600-127806400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:127803800-127804600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:127803800-127804600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:127803800-127804800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr7:127803800-127804800	Enhancers	Pancreas	Pancrea
17	chr7:127803800-127805000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr7:127803800-127805000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr7:127803800-127805200	Enhancers	Osteobl	bone
20	chr7:127803800-127805400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:127803800-127805400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr7:127803800-127805600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:127803800-127805600	Enhancers	HSMM	muscle
24	chr7:127803800-127806200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr7:127803800-127806200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
26	chr7:127803800-127806400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
27	chr7:127804000-127805200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
28	chr7:127804000-127805200	Enhancers	NHDF-Ad	bronchial
29	chr7:127804000-127805400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:127804000-127805400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:127804000-127805800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:127804200-127805400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:127804200-127805400	Enhancers	A549	lung
34	chr7:127804200-127805800	Enhancers	HSMMtube	muscle
35	chr7:127804400-127804800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:127804400-127804800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr7:127804400-127804800	Bivalent Enhancer	Placenta	Placenta
38	chr7:127804400-127805000	Flanking Active TSS	NHEK	skin
39	chr7:127804400-127805200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:127804400-127805200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links