Variant report
| Variant | rs62484033 |
|---|---|
| Chromosome Location | chr7:127801247-127801248 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:127799897..127802659-chr7:127804825..127806354,2 | K562 | blood: | |
| 2 | chr7:127796671..127799256-chr7:127799525..127801651,2 | K562 | blood: | |
| 3 | chr7:127799917..127801539-chr7:127837729..127840033,2 | K562 | blood: | |
| 4 | chr7:127799537..127801607-chr7:127803464..127805695,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs10254438 | 1.00[ASN][1000 genomes] |
| rs10269842 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10447853 | 1.00[ASN][1000 genomes] |
| rs10447854 | 1.00[ASN][1000 genomes] |
| rs10447855 | 1.00[ASN][1000 genomes] |
| rs12154534 | 1.00[ASN][1000 genomes] |
| rs12155383 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12155392 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12533765 | 1.00[ASN][1000 genomes] |
| rs12534062 | 1.00[ASN][1000 genomes] |
| rs12537331 | 1.00[ASN][1000 genomes] |
| rs17151707 | 1.00[ASN][1000 genomes] |
| rs17151739 | 1.00[ASN][1000 genomes] |
| rs17679136 | 1.00[ASN][1000 genomes] |
| rs17679208 | 1.00[ASN][1000 genomes] |
| rs17735893 | 1.00[ASN][1000 genomes] |
| rs17735958 | 1.00[ASN][1000 genomes] |
| rs28399051 | 1.00[ASN][1000 genomes] |
| rs28541365 | 1.00[ASN][1000 genomes] |
| rs28558944 | 1.00[ASN][1000 genomes] |
| rs28566925 | 1.00[ASN][1000 genomes] |
| rs28625157 | 1.00[ASN][1000 genomes] |
| rs28692983 | 1.00[ASN][1000 genomes] |
| rs4731407 | 0.81[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs56154423 | 1.00[ASN][1000 genomes] |
| rs56340588 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62484024 | 1.00[ASN][1000 genomes] |
| rs62484025 | 1.00[ASN][1000 genomes] |
| rs62484026 | 1.00[ASN][1000 genomes] |
| rs62484029 | 1.00[ASN][1000 genomes] |
| rs62484030 | 1.00[ASN][1000 genomes] |
| rs62484031 | 1.00[ASN][1000 genomes] |
| rs62484032 | 1.00[ASN][1000 genomes] |
| rs62484034 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62484035 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6962635 | 1.00[ASN][1000 genomes] |
| rs6965344 | 1.00[ASN][1000 genomes] |
| rs6975863 | 1.00[ASN][1000 genomes] |
| rs73226626 | 1.00[ASN][1000 genomes] |
| rs73238088 | 1.00[ASN][1000 genomes] |
| rs73239704 | 1.00[ASN][1000 genomes] |
| rs73239710 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022385 | chr7:127246656-127971194 | Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv539120 | chr7:127246656-127971194 | Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 3 | esv33413 | chr7:127800064-127929303 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | esv989073 | chr7:127800713-127812327 | Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:127790600-127803400 | Weak transcription | Spleen | Spleen |
| 2 | chr7:127800800-127803200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 3 | chr7:127801000-127802000 | Enhancers | HMEC | breast |
| 4 | chr7:127801200-127802200 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
