Variant report

Variant	rs56340588
Chromosome Location	chr7:127799341-127799342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10254438	1.00[ASN][1000 genomes]
rs10269842	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10447853	1.00[ASN][1000 genomes]
rs10447854	1.00[ASN][1000 genomes]
rs10447855	1.00[ASN][1000 genomes]
rs12154534	1.00[ASN][1000 genomes]
rs12155383	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12155392	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12533765	1.00[ASN][1000 genomes]
rs12534062	1.00[ASN][1000 genomes]
rs12537331	1.00[ASN][1000 genomes]
rs17151707	1.00[ASN][1000 genomes]
rs17151739	1.00[ASN][1000 genomes]
rs17679136	1.00[ASN][1000 genomes]
rs17679208	1.00[ASN][1000 genomes]
rs17735893	1.00[ASN][1000 genomes]
rs17735958	1.00[ASN][1000 genomes]
rs28399051	1.00[ASN][1000 genomes]
rs28541365	1.00[ASN][1000 genomes]
rs28558944	1.00[ASN][1000 genomes]
rs28566925	1.00[ASN][1000 genomes]
rs28625157	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28692983	1.00[ASN][1000 genomes]
rs4731407	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56154423	1.00[ASN][1000 genomes]
rs62484024	1.00[ASN][1000 genomes]
rs62484025	1.00[ASN][1000 genomes]
rs62484026	1.00[ASN][1000 genomes]
rs62484029	1.00[ASN][1000 genomes]
rs62484030	1.00[ASN][1000 genomes]
rs62484031	1.00[ASN][1000 genomes]
rs62484032	1.00[ASN][1000 genomes]
rs62484033	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62484034	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62484035	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6962635	1.00[ASN][1000 genomes]
rs6965344	1.00[ASN][1000 genomes]
rs6975863	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226626	1.00[ASN][1000 genomes]
rs73238088	1.00[ASN][1000 genomes]
rs73239704	1.00[ASN][1000 genomes]
rs73239710	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127790600-127803400	Weak transcription	Spleen	Spleen
2	chr7:127795800-127800400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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