Variant report

Variant	rs4743469
Chromosome Location	chr9:98788301-98788302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr9:98788150-98788906	H1-hESC	embryonic stem cell:	n/a	chr9:98788600-98788614 chr9:98788576-98788588 chr9:98788584-98788603 chr9:98788578-98788588 chr9:98788577-98788590
2	ZNF143	chr9:98788256-98788752	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr9:98788300-98788450	HCM	heart:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98784039..98786025-chr9:98787096..98789259,2	K562	blood:

Variant related genes	Relation type
LINC00092	TF binding region
ENSG00000225194	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12003772	0.92[ASN][1000 genomes]
rs12551596	0.81[ASN][1000 genomes]
rs12555687	0.81[ASN][1000 genomes]
rs1413178	0.81[ASN][1000 genomes]
rs16910333	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16910342	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16910409	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16910427	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2297009	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2423	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3739755	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3739756	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4742769	0.81[ASN][1000 genomes]
rs4742801	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743383	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743460	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55651016	0.84[ASN][1000 genomes]
rs55781050	0.81[ASN][1000 genomes]
rs55797980	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55865494	0.87[AMR][1000 genomes]
rs55881510	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56063686	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56110216	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56125887	0.81[ASN][1000 genomes]
rs56319412	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56372801	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56403401	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57096664	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58654424	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59046245	0.81[ASN][1000 genomes]
rs59189545	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61036807	0.81[ASN][1000 genomes]
rs61093440	0.81[ASN][1000 genomes]
rs9792431	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9792684	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv524266	chr9:98780606-98804274	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3354669	chr9:98786831-98791329	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98784400-98788800	Weak transcription	Gastric	stomach
2	chr9:98785200-98788400	Weak transcription	Right Ventricle	heart
3	chr9:98785400-98788800	Weak transcription	Brain Angular Gyrus	brain
4	chr9:98785400-98788800	Weak transcription	Ovary	ovary
5	chr9:98785400-98788800	Weak transcription	Right Atrium	heart
6	chr9:98785400-98789000	Weak transcription	Brain Anterior Caudate	brain
7	chr9:98785400-98789000	Weak transcription	Spleen	Spleen
8	chr9:98785600-98789000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:98785600-98789000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr9:98786000-98788800	Weak transcription	Fetal Lung	lung
11	chr9:98786200-98788800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr9:98786400-98789600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:98786600-98789000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:98786800-98789400	Weak transcription	Esophagus	oesophagus
15	chr9:98788200-98788400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
16	chr9:98788200-98788400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr9:98788200-98788800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr9:98788200-98789400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr9:98788200-98789600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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