Variant report

Variant	rs16910342
Chromosome Location	chr9:98643047-98643048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98642876..98646721-chr9:98647995..98651810,4	K562	blood:
2	chr9:98640806..98643055-chr9:98646394..98647992,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10989106	0.85[MEX][hapmap]
rs12003772	0.92[ASN][1000 genomes]
rs12551596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12551880	0.93[ASN][1000 genomes]
rs12554182	0.90[ASN][1000 genomes]
rs12555687	0.97[ASN][1000 genomes]
rs1413178	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16910333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16910427	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17303324	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2280143	0.82[JPT][hapmap]
rs2297009	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3739755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3739756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4742763	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs4742769	1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs4742801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4743327	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4743351	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs4743383	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743469	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743507	1.00[AFR][1000 genomes]
rs4743508	1.00[AFR][1000 genomes]
rs55651016	1.00[ASN][1000 genomes]
rs55770584	0.93[ASN][1000 genomes]
rs55781050	0.97[ASN][1000 genomes]
rs55797980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55849673	1.00[AFR][1000 genomes]
rs55865494	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55881510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56063686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56070531	0.93[ASN][1000 genomes]
rs56110216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56125887	0.97[ASN][1000 genomes]
rs56319412	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56372801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56403401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57096664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57287260	1.00[AFR][1000 genomes]
rs58654424	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59046245	0.97[ASN][1000 genomes]
rs59189545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60351339	1.00[AFR][1000 genomes]
rs61036807	0.97[ASN][1000 genomes]
rs61093440	0.97[ASN][1000 genomes]
rs9721742	0.82[ASN][1000 genomes]
rs9792431	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9792684	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv893600	chr9:98608989-98775459	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98638800-98648000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:98638800-98648400	Weak transcription	Lung	lung
3	chr9:98638800-98649000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:98638800-98654800	Weak transcription	Esophagus	oesophagus
5	chr9:98638800-98702200	Weak transcription	Pancreas	Pancrea
6	chr9:98639200-98644200	Weak transcription	Aorta	Aorta
7	chr9:98639400-98643200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr9:98639400-98643400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:98639400-98644000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:98639400-98647800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:98639400-98649000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:98639400-98650800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:98639400-98677800	Weak transcription	Placenta	Placenta
14	chr9:98639400-98678000	Weak transcription	Ovary	ovary
15	chr9:98639600-98644600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:98639600-98646200	Weak transcription	HSMMtube	muscle
17	chr9:98639600-98649200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:98639600-98678000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:98639800-98643200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:98639800-98643200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:98639800-98643200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr9:98639800-98644000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:98639800-98664200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr9:98639800-98677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:98640000-98643200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr9:98640000-98643400	Weak transcription	Primary B cells from cord blood	blood
27	chr9:98640000-98643400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:98640000-98643600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:98640000-98643600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr9:98640000-98643600	Weak transcription	Adipose Nuclei	Adipose
31	chr9:98640000-98643800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:98640000-98643800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:98640000-98643800	Weak transcription	Brain Germinal Matrix	brain
34	chr9:98640000-98644200	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:98640000-98644200	Weak transcription	Gastric	stomach
36	chr9:98640000-98644200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:98640000-98644400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr9:98640000-98645400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr9:98640000-98649000	Weak transcription	Spleen	Spleen
40	chr9:98640000-98661600	Weak transcription	Right Atrium	heart
41	chr9:98640000-98663600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:98640000-98678200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr9:98640000-98680600	Weak transcription	Colonic Mucosa	Colon
44	chr9:98640000-98685600	Weak transcription	Right Ventricle	heart
45	chr9:98640000-98718600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr9:98640200-98643400	Weak transcription	Fetal Intestine Large	intestine
47	chr9:98640200-98643600	Weak transcription	Fetal Thymus	thymus
48	chr9:98640200-98643800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr9:98640200-98644200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:98640200-98644200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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