Variant report

Variant	rs9721742
Chromosome Location	chr9:98592952-98592953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98591010..98593309-chr9:98600980..98602755,2	MCF-7	breast:
2	chr9:98591198..98593705-chr9:98595465..98597908,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12551596	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12551880	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12554182	0.95[AMR][1000 genomes]
rs12555687	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1413178	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16910333	0.82[ASN][1000 genomes]
rs16910342	0.82[ASN][1000 genomes]
rs17303073	0.95[AMR][1000 genomes]
rs17303324	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3739755	0.80[ASN][1000 genomes]
rs4742763	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4742769	0.85[ASN][1000 genomes]
rs4743327	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4743351	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4743383	0.82[ASN][1000 genomes]
rs55651016	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55770584	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55781050	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56063686	0.80[ASN][1000 genomes]
rs56070531	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56125887	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57096664	0.82[ASN][1000 genomes]
rs59046245	0.85[ASN][1000 genomes]
rs59189545	0.80[ASN][1000 genomes]
rs61036807	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61093440	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98570400-98593200	Weak transcription	Gastric	stomach
2	chr9:98570400-98593800	Weak transcription	Right Atrium	heart
3	chr9:98570800-98601400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:98576000-98596000	Weak transcription	Aorta	Aorta
5	chr9:98581800-98593800	Weak transcription	Fetal Intestine Small	intestine
6	chr9:98585200-98593600	Weak transcription	Spleen	Spleen
7	chr9:98585800-98593200	Weak transcription	Fetal Stomach	stomach
8	chr9:98585800-98593200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:98586000-98593200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:98589600-98594400	Weak transcription	Left Ventricle	heart
11	chr9:98591200-98596600	Weak transcription	Fetal Lung	lung
12	chr9:98592400-98593200	Weak transcription	Ovary	ovary
13	chr9:98592400-98597000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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