Variant report

Variant	rs55797980
Chromosome Location	chr9:98780093-98780094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98779093..98782879-chr9:98784217..98786227,3	K562	blood:
2	chr9:98779093..98781060-chr9:98784217..98786065,2	K562	blood:
3	chr9:98771457..98773496-chr9:98779706..98781574,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12003772	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12551596	0.88[ASN][1000 genomes]
rs12555687	0.88[ASN][1000 genomes]
rs1413178	0.88[ASN][1000 genomes]
rs16910333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16910342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16910409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16910427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17303324	0.85[ASN][1000 genomes]
rs2297009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3739755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3739756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742769	0.88[ASN][1000 genomes]
rs4742801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743351	0.83[ASN][1000 genomes]
rs4743383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743469	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743507	1.00[AFR][1000 genomes]
rs4743508	1.00[AFR][1000 genomes]
rs55651016	0.92[ASN][1000 genomes]
rs55770584	0.85[ASN][1000 genomes]
rs55781050	0.88[ASN][1000 genomes]
rs55849673	1.00[AFR][1000 genomes]
rs55865494	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55881510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55888215	1.00[AFR][1000 genomes]
rs56063686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56070531	0.85[ASN][1000 genomes]
rs56110216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56125887	0.88[ASN][1000 genomes]
rs56319412	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56372801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56403401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57096664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57287260	1.00[AFR][1000 genomes]
rs58654424	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59046245	0.88[ASN][1000 genomes]
rs59189545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60351339	1.00[AFR][1000 genomes]
rs61036807	0.88[ASN][1000 genomes]
rs61093440	0.88[ASN][1000 genomes]
rs9792431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98714000-98782600	Weak transcription	HUVEC	blood vessel
2	chr9:98734600-98782400	Weak transcription	NHEK	skin
3	chr9:98747800-98782800	Weak transcription	Fetal Kidney	kidney
4	chr9:98748000-98782600	Weak transcription	HMEC	breast
5	chr9:98748400-98782800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:98748600-98781200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:98759000-98780200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:98765800-98781600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:98766400-98780800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr9:98768600-98782600	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:98771200-98781200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:98771600-98781600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:98771600-98782600	Weak transcription	Placenta	Placenta
14	chr9:98771600-98782800	Weak transcription	A549	lung
15	chr9:98771600-98783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:98771800-98780800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:98771800-98781800	Weak transcription	Right Ventricle	heart
18	chr9:98771800-98782600	Weak transcription	Ovary	ovary
19	chr9:98772000-98781400	Weak transcription	NHLF	lung
20	chr9:98772000-98781600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:98772200-98780800	Weak transcription	Stomach Mucosa	stomach
22	chr9:98772200-98782600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr9:98772200-98782800	Weak transcription	Brain Angular Gyrus	brain
24	chr9:98772400-98780600	Weak transcription	Fetal Heart	heart
25	chr9:98772600-98782400	Weak transcription	Brain Hippocampus Middle	brain
26	chr9:98773000-98780400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:98773000-98781600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:98773000-98781600	Weak transcription	Brain Germinal Matrix	brain
29	chr9:98773600-98780800	Weak transcription	Small Intestine	intestine
30	chr9:98773600-98782600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr9:98773800-98782400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr9:98773800-98782800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:98774000-98782600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:98774600-98781800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr9:98774600-98782600	Weak transcription	Brain Anterior Caudate	brain
36	chr9:98774800-98781000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr9:98775000-98780200	Strong transcription	Left Ventricle	heart
38	chr9:98775200-98781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:98775200-98782800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:98775200-98783000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:98775400-98780400	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr9:98775400-98781200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:98775600-98780200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:98776600-98782800	Weak transcription	Brain Substantia Nigra	brain
45	chr9:98776600-98782800	Weak transcription	Gastric	stomach
46	chr9:98776800-98780200	Enhancers	Primary T cells fromperipheralblood	blood
47	chr9:98776800-98780200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:98776800-98781000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr9:98776800-98781400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr9:98777000-98780200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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