Variant report

Variant	rs55888215
Chromosome Location	chr9:98862133-98862134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16910409	1.00[AFR][1000 genomes]
rs2297009	1.00[AFR][1000 genomes]
rs2423	1.00[AFR][1000 genomes]
rs3739755	1.00[AFR][1000 genomes]
rs3739756	1.00[AFR][1000 genomes]
rs4742801	1.00[AFR][1000 genomes]
rs4743460	1.00[AFR][1000 genomes]
rs4743507	1.00[AFR][1000 genomes]
rs4743508	1.00[AFR][1000 genomes]
rs55797980	1.00[AFR][1000 genomes]
rs55849673	1.00[AFR][1000 genomes]
rs55881510	1.00[AFR][1000 genomes]
rs56110216	1.00[AFR][1000 genomes]
rs56319412	1.00[AFR][1000 genomes]
rs56372801	1.00[AFR][1000 genomes]
rs56403401	1.00[AFR][1000 genomes]
rs57287260	1.00[AFR][1000 genomes]
rs58654424	1.00[AFR][1000 genomes]
rs59189545	1.00[AFR][1000 genomes]
rs60351339	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98859600-98862200	Weak transcription	Fetal Thymus	thymus
2	chr9:98859800-98862600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:98860200-98862600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:98861400-98863600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:98861600-98862800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:98862000-98863600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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