Variant report

Variant	rs4743508
Chromosome Location	chr9:98828707-98828708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98827070..98829850-chr9:98836029..98838075,2	K562	blood:
2	chr9:98827301..98828802-chr9:98832727..98835494,2	K562	blood:
3	chr9:98825741..98828802-chr9:98832378..98835494,4	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10989106	1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[ASN][1000 genomes]
rs16910333	1.00[ASW][hapmap];0.85[MEX][hapmap];1.00[AFR][1000 genomes]
rs16910342	0.85[MEX][hapmap];1.00[AFR][1000 genomes]
rs16910409	1.00[AFR][1000 genomes]
rs2297009	1.00[AFR][1000 genomes]
rs2423	1.00[AFR][1000 genomes]
rs3739755	1.00[AFR][1000 genomes]
rs3739756	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes]
rs4742801	1.00[ASW][hapmap];0.85[MEX][hapmap];1.00[AFR][1000 genomes]
rs4743383	1.00[AFR][1000 genomes]
rs4743460	1.00[AFR][1000 genomes]
rs4743501	0.89[JPT][hapmap]
rs4743507	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4743509	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55714028	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55797980	1.00[AFR][1000 genomes]
rs55849673	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55881510	1.00[AFR][1000 genomes]
rs55888215	1.00[AFR][1000 genomes]
rs56063686	1.00[AFR][1000 genomes]
rs56110216	1.00[AFR][1000 genomes]
rs56319412	1.00[AFR][1000 genomes]
rs56372801	1.00[AFR][1000 genomes]
rs56403401	1.00[AFR][1000 genomes]
rs57096664	1.00[AFR][1000 genomes]
rs57287260	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58654424	1.00[AFR][1000 genomes]
rs59189545	1.00[AFR][1000 genomes]
rs59478222	0.80[ASN][1000 genomes]
rs60351339	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98812200-98829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:98812800-98829400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:98819800-98832000	Weak transcription	Gastric	stomach
4	chr9:98824200-98829000	Weak transcription	HSMMtube	muscle
5	chr9:98824200-98829400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:98824200-98829400	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:98824200-98829400	Weak transcription	Lung	lung
8	chr9:98824200-98829800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:98824200-98833600	Weak transcription	Brain Anterior Caudate	brain
10	chr9:98824200-98843000	Weak transcription	Esophagus	oesophagus
11	chr9:98824400-98829600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:98824400-98830800	Weak transcription	Stomach Mucosa	stomach
13	chr9:98824400-98831400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:98824600-98829000	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:98824800-98829000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:98824800-98829000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:98824800-98829000	Weak transcription	NHDF-Ad	bronchial
18	chr9:98824800-98829400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:98824800-98829400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:98824800-98829400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:98824800-98833800	Weak transcription	Fetal Intestine Small	intestine
22	chr9:98824800-98835200	Weak transcription	Fetal Intestine Large	intestine
23	chr9:98824800-98835600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:98825000-98829000	Weak transcription	Ovary	ovary
25	chr9:98825200-98829200	Weak transcription	Fetal Lung	lung
26	chr9:98827400-98829600	Weak transcription	Spleen	Spleen
27	chr9:98827600-98829200	Weak transcription	Adipose Nuclei	Adipose
28	chr9:98827600-98830600	Weak transcription	Pancreas	Pancrea
29	chr9:98827600-98834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:98827800-98829000	Weak transcription	Aorta	Aorta
31	chr9:98828400-98829200	Enhancers	Right Atrium	heart
32	chr9:98828600-98832200	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links