Variant report

Variant	rs4743956
Chromosome Location	chr9:97276755-97276756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:100806149..100807853-chr9:97276402..97278973,2	MCF-7	breast:
2	chr9:97270387..97272574-chr9:97275358..97278004,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10119223	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10993226	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12552009	0.83[EUR][1000 genomes]
rs2679611	0.83[EUR][1000 genomes]
rs2790400	0.80[EUR][1000 genomes]
rs2790404	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2987886	0.82[EUR][1000 genomes]
rs2987888	0.83[EUR][1000 genomes]
rs2987889	0.84[EUR][1000 genomes]
rs2993975	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4291336	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4744349	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs488270	0.82[EUR][1000 genomes]
rs491123	0.81[EUR][1000 genomes]
rs497361	0.81[EUR][1000 genomes]
rs504644	0.83[EUR][1000 genomes]
rs543698	0.81[EUR][1000 genomes]
rs547693	0.83[EUR][1000 genomes]
rs549615	0.83[EUR][1000 genomes]
rs572689	0.83[EUR][1000 genomes]
rs573371	0.83[EUR][1000 genomes]
rs573847	0.83[EUR][1000 genomes]
rs605323	0.83[EUR][1000 genomes]
rs606207	0.83[EUR][1000 genomes]
rs607160	0.83[EUR][1000 genomes]
rs663092	0.84[EUR][1000 genomes]
rs678363	0.83[EUR][1000 genomes]
rs7024700	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9409801	0.83[EUR][1000 genomes]
rs9696774	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv893594	chr9:97221463-97283226	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv969761	chr9:97254596-97288069	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97276200-97278000	Enhancers	HepG2	liver
2	chr9:97276400-97277400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:97276600-97277200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:97276600-97278000	Enhancers	Liver	Liver

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