Variant report

Variant	rs7024700
Chromosome Location	chr9:97273777-97273778
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97268511..97271349-chr9:97272265..97274587,2	K562	blood:

Variant related genes	Relation type
ENSG00000202445	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10119223	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10761326	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10821367	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs10993226	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10993241	0.91[CHB][hapmap]
rs10993242	0.87[CHB][hapmap]
rs12552009	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2280300	0.92[CHB][hapmap]
rs2679602	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs2679611	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2790400	0.84[EUR][1000 genomes]
rs2790404	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2945802	0.95[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2987882	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs2987886	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2987887	0.83[EUR][1000 genomes]
rs2987888	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2987889	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2993973	0.80[EUR][1000 genomes]
rs2993975	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4291336	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4743956	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744349	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744353	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs488270	0.85[EUR][1000 genomes]
rs491123	0.83[EUR][1000 genomes]
rs497361	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs504644	0.86[EUR][1000 genomes]
rs514222	0.84[CEU][hapmap];0.91[CHB][hapmap]
rs540124	0.95[CEU][hapmap]
rs543698	0.84[EUR][1000 genomes]
rs547693	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs549615	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs572689	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs573371	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs573847	0.86[EUR][1000 genomes]
rs605323	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs606207	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs607160	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs608837	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs663092	0.87[EUR][1000 genomes]
rs678363	0.88[EUR][1000 genomes]
rs688843	0.96[CEU][hapmap];0.92[CHB][hapmap]
rs693399	0.84[CEU][hapmap];0.92[CHB][hapmap]
rs781650	0.95[CEU][hapmap];0.95[CHB][hapmap]
rs802918	0.87[CHB][hapmap]
rs9409801	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs965474	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9696211	0.81[EUR][1000 genomes]
rs9696774	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv893594	chr9:97221463-97283226	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv969761	chr9:97254596-97288069	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97272800-97273800	Enhancers	Gastric	stomach
2	chr9:97272800-97274800	Enhancers	HepG2	liver
3	chr9:97273200-97273800	Enhancers	Pancreas	Pancrea
4	chr9:97273400-97274600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:97273400-97275200	Enhancers	Pancreatic Islets	Pancreatic Islet

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