Variant report

Variant	rs802918
Chromosome Location	chr9:97345467-97345468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97343362..97346038-chr9:97364705..97367422,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10115929	0.83[AMR][1000 genomes]
rs1042144	0.86[EUR][1000 genomes]
rs10821367	0.86[CHB][hapmap]
rs10993241	0.86[CHB][hapmap]
rs10993242	0.82[CHB][hapmap]
rs12238876	0.82[EUR][1000 genomes]
rs13291835	0.83[EUR][1000 genomes]
rs13296485	0.85[EUR][1000 genomes]
rs1754435	0.85[EUR][1000 genomes]
rs1754439	0.87[EUR][1000 genomes]
rs2280300	0.87[CHB][hapmap]
rs2460138	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2679599	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2679600	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2679602	0.92[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2772013	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2772022	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2790390	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2945799	0.91[EUR][1000 genomes]
rs2945802	0.86[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2987882	0.92[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2987897	0.85[EUR][1000 genomes]
rs2993912	0.83[EUR][1000 genomes]
rs2993958	0.85[EUR][1000 genomes]
rs2993959	0.85[EUR][1000 genomes]
rs2993961	0.85[EUR][1000 genomes]
rs2993962	0.85[EUR][1000 genomes]
rs4075984	0.85[EUR][1000 genomes]
rs4744353	0.86[CHB][hapmap]
rs479197	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs514222	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs515339	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs518768	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs540124	0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs543731	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs547834	0.84[EUR][1000 genomes]
rs548348	0.86[EUR][1000 genomes]
rs576745	0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs583365	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs590090	0.91[AFR][1000 genomes]
rs632506	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs652867	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs688843	0.87[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs693399	0.92[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7024700	0.87[CHB][hapmap]
rs781650	0.90[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs802919	0.85[EUR][1000 genomes]
rs8192689	0.84[EUR][1000 genomes]
rs874248	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs965474	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv466436	chr9:97343620-97369149	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv614917	chr9:97343620-97369149	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97317200-97354000	Weak transcription	Gastric	stomach
2	chr9:97335000-97349600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:97340000-97349000	Weak transcription	Fetal Stomach	stomach
4	chr9:97340600-97346400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:97342400-97347400	Strong transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:97342800-97347600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:97343800-97348800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr9:97344400-97348800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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