Variant report

Variant	rs4743960
Chromosome Location	chr9:97363177-97363178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97360979..97363553-chr9:97393005..97395544,2	MCF-7	breast:
2	chr9:97363139..97364825-chr9:97366128..97368386,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10114599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10115489	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1042144	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs10761344	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10761346	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821373	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821374	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993275	0.82[CHB][hapmap]
rs16937175	0.82[CHB][hapmap]
rs1754435	0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap]
rs1754439	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs1977483	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1999122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1999123	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2017136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296708	0.82[CHB][hapmap]
rs2297084	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2772023	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2993958	0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[YRI][hapmap]
rs2993961	0.83[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs3824484	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743961	0.82[CHB][hapmap]
rs4744359	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744362	0.82[CHB][hapmap]
rs548348	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs635108	0.82[ASN][1000 genomes]
rs6479555	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044434	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7856456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872412	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8192689	0.83[CHB][hapmap]
rs874248	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs9695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv466436	chr9:97343620-97369149	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv614917	chr9:97343620-97369149	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97347600-97374000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:97351800-97369200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:97356400-97365600	Weak transcription	Psoas Muscle	Psoas
4	chr9:97358000-97368800	Weak transcription	Gastric	stomach
5	chr9:97362000-97364400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:97362200-97363600	Enhancers	Liver	Liver
7	chr9:97362400-97363200	Enhancers	Fetal Muscle Leg	muscle
8	chr9:97362400-97363200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr9:97362400-97363200	Enhancers	Stomach Mucosa	stomach
10	chr9:97362400-97363400	Enhancers	Fetal Intestine Small	intestine
11	chr9:97362400-97363400	Flanking Active TSS	HepG2	liver
12	chr9:97362400-97363600	Enhancers	Colonic Mucosa	Colon
13	chr9:97362400-97363600	Enhancers	Fetal Intestine Large	intestine
14	chr9:97362400-97363600	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr9:97362400-97363600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr9:97362400-97363600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr9:97362600-97364800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:97362600-97367000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:97362800-97363200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr9:97362800-97364000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr9:97362800-97365600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:97363000-97363400	Enhancers	Duodenum Mucosa	Duodenum
23	chr9:97363000-97363400	Enhancers	Duodenum Smooth Muscle	Duodenum

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