Variant report

Variant	rs635108
Chromosome Location	chr9:97352238-97352239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97346870..97349447-chr9:97350199..97352748,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10114599	0.82[ASN][1000 genomes]
rs10115489	0.82[ASN][1000 genomes]
rs10761346	0.82[ASN][1000 genomes]
rs1754432	0.83[EUR][1000 genomes]
rs1754433	0.84[EUR][1000 genomes]
rs2017136	0.82[ASN][1000 genomes]
rs2297084	0.80[ASN][1000 genomes]
rs2406664	0.84[EUR][1000 genomes]
rs2406665	0.84[EUR][1000 genomes]
rs2406666	0.84[EUR][1000 genomes]
rs2772011	0.84[EUR][1000 genomes]
rs2772012	0.83[EUR][1000 genomes]
rs2772023	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2945795	0.84[EUR][1000 genomes]
rs2945798	0.84[EUR][1000 genomes]
rs2987883	0.83[EUR][1000 genomes]
rs2993963	0.83[EUR][1000 genomes]
rs3824484	0.80[EUR][1000 genomes]
rs4743960	0.82[ASN][1000 genomes]
rs478563	0.83[EUR][1000 genomes]
rs478604	0.82[EUR][1000 genomes]
rs498533	0.83[EUR][1000 genomes]
rs498635	0.83[EUR][1000 genomes]
rs501380	0.83[EUR][1000 genomes]
rs540236	0.84[EUR][1000 genomes]
rs558753	0.83[EUR][1000 genomes]
rs564430	0.83[EUR][1000 genomes]
rs586140	0.86[EUR][1000 genomes]
rs597003	0.83[EUR][1000 genomes]
rs598386	0.83[EUR][1000 genomes]
rs599229	0.83[EUR][1000 genomes]
rs609901	0.83[EUR][1000 genomes]
rs612498	0.83[EUR][1000 genomes]
rs612952	0.84[EUR][1000 genomes]
rs642035	0.84[EUR][1000 genomes]
rs642477	0.84[EUR][1000 genomes]
rs642952	0.83[EUR][1000 genomes]
rs644237	0.84[EUR][1000 genomes]
rs6479555	0.82[ASN][1000 genomes]
rs660911	0.83[EUR][1000 genomes]
rs693122	0.83[EUR][1000 genomes]
rs7856456	0.82[ASN][1000 genomes]
rs7856557	0.82[ASN][1000 genomes]
rs7872412	0.80[ASN][1000 genomes]
rs9695	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv466436	chr9:97343620-97369149	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv614917	chr9:97343620-97369149	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97317200-97354000	Weak transcription	Gastric	stomach
2	chr9:97347400-97353800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:97347600-97374000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr9:97351200-97352400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr9:97351800-97369200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links