Variant report

Variant	rs4744586
Chromosome Location	chr9:72669561-72669562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11141566	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11141672	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11141697	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12349576	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12352964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1927104	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1927107	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28462281	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2997657	0.88[ASN][1000 genomes]
rs2997665	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3015234	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3015237	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3015239	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237238	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4237239	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4237240	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4367620	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744970	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744971	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4744972	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744979	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4744981	0.84[ASN][1000 genomes]
rs6559970	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7035878	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7045153	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs755778	0.87[ASN][1000 genomes]
rs7853094	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72661600-72671600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:72661600-72672000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:72661800-72671600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:72664800-72670400	Weak transcription	Left Ventricle	heart
5	chr9:72664800-72670400	Weak transcription	Right Ventricle	heart
6	chr9:72665000-72669800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:72665000-72670200	Weak transcription	Lung	lung
8	chr9:72665200-72670200	Weak transcription	Fetal Stomach	stomach
9	chr9:72665200-72673600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:72665400-72669600	Weak transcription	Fetal Lung	lung
11	chr9:72665400-72673200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:72666800-72670600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:72667000-72670200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:72667000-72670600	Enhancers	HMEC	breast
15	chr9:72667200-72669800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:72667200-72670000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:72667200-72670400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:72667400-72670600	Genic enhancers	HSMM	muscle
19	chr9:72667600-72670600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:72667600-72688400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:72667800-72670000	Enhancers	HSMMtube	muscle
22	chr9:72667800-72670400	Enhancers	NHEK	skin
23	chr9:72667800-72670600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr9:72668000-72669600	Enhancers	Colon Smooth Muscle	Colon
25	chr9:72668200-72670400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr9:72668400-72670000	Enhancers	HUVEC	blood vessel
27	chr9:72668400-72670600	Enhancers	Fetal Muscle Leg	muscle
28	chr9:72668600-72669600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:72668600-72670000	Enhancers	NH-A	brain
30	chr9:72668600-72670200	Weak transcription	Psoas Muscle	Psoas
31	chr9:72668800-72670000	Weak transcription	Aorta	Aorta
32	chr9:72668800-72670200	Weak transcription	Adipose Nuclei	Adipose
33	chr9:72668800-72670200	Weak transcription	Ovary	ovary
34	chr9:72668800-72670200	Weak transcription	Right Atrium	heart
35	chr9:72668800-72671400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:72668800-72671600	Weak transcription	Pancreas	Pancrea
37	chr9:72668800-72671600	Weak transcription	Spleen	Spleen
38	chr9:72668800-72675800	Enhancers	Rectal Smooth Muscle	rectum
39	chr9:72668800-72676600	Weak transcription	Gastric	stomach
40	chr9:72668800-72681400	Weak transcription	Esophagus	oesophagus
41	chr9:72669000-72670000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr9:72669200-72669600	Enhancers	Stomach Smooth Muscle	stomach
43	chr9:72669200-72669800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:72669200-72670200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr9:72669200-72670200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr9:72669200-72675000	Weak transcription	NHDF-Ad	bronchial
47	chr9:72669200-72682600	Weak transcription	Osteobl	bone
48	chr9:72669400-72670400	Weak transcription	Hela-S3	cervix
49	chr9:72669400-72670400	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links