Variant report

Variant	rs755778
Chromosome Location	chr9:72660559-72660560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72655440..72657664-chr9:72659271..72661535,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11141566	0.86[ASN][1000 genomes]
rs11141672	0.83[ASN][1000 genomes]
rs11141697	0.83[ASN][1000 genomes]
rs12349576	0.81[ASN][1000 genomes]
rs12352964	0.91[ASN][1000 genomes]
rs28462281	0.86[ASN][1000 genomes]
rs2997657	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2997665	0.87[ASN][1000 genomes]
rs3015234	0.83[ASN][1000 genomes]
rs3015237	0.87[ASN][1000 genomes]
rs3015239	0.89[ASN][1000 genomes]
rs4237238	0.85[ASN][1000 genomes]
rs4237239	0.85[ASN][1000 genomes]
rs4237240	0.85[ASN][1000 genomes]
rs4367620	0.87[ASN][1000 genomes]
rs4744586	0.87[ASN][1000 genomes]
rs4744970	0.87[ASN][1000 genomes]
rs4744971	0.89[ASN][1000 genomes]
rs4744972	0.87[ASN][1000 genomes]
rs4744979	0.83[ASN][1000 genomes]
rs4744981	0.81[ASN][1000 genomes]
rs6559970	0.83[ASN][1000 genomes]
rs7035878	0.86[ASN][1000 genomes]
rs7045153	0.89[ASN][1000 genomes]
rs7853094	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72658000-72661000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
2	chr9:72658200-72660600	Active TSS	Right Atrium	heart
3	chr9:72658200-72661400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
4	chr9:72658200-72662600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:72658400-72660600	Active TSS	Colon Smooth Muscle	Colon
6	chr9:72658600-72662200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:72658800-72660600	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr9:72659200-72661200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:72659600-72663400	Weak transcription	Spleen	Spleen
10	chr9:72659600-72663800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:72659800-72661200	Weak transcription	Aorta	Aorta
12	chr9:72659800-72661400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr9:72659800-72661600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:72659800-72661800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:72659800-72662000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr9:72659800-72663800	Weak transcription	Fetal Heart	heart
17	chr9:72659800-72664200	Weak transcription	Brain Germinal Matrix	brain
18	chr9:72660000-72660600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr9:72660000-72661400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:72660000-72661600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:72660000-72662000	Active TSS	Adipose Nuclei	Adipose
22	chr9:72660000-72662200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:72660000-72663600	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:72660000-72663800	Weak transcription	Brain Anterior Caudate	brain
25	chr9:72660000-72663800	Weak transcription	Osteobl	bone
26	chr9:72660000-72664600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:72660000-72665200	Transcr. at gene 5' and 3'	HSMMtube	muscle
28	chr9:72660000-72668400	Weak transcription	HUVEC	blood vessel
29	chr9:72660200-72660600	Enhancers	H9 Cell Line	embryonic stem cell
30	chr9:72660200-72660600	Active TSS	Colonic Mucosa	Colon
31	chr9:72660200-72660600	Active TSS	Duodenum Mucosa	Duodenum
32	chr9:72660200-72660600	Enhancers	Left Ventricle	heart
33	chr9:72660200-72660800	Flanking Active TSS	HSMM	muscle
34	chr9:72660200-72661000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:72660200-72661000	Active TSS	NH-A	brain
36	chr9:72660200-72661200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr9:72660200-72661200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr9:72660200-72661200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr9:72660200-72661200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr9:72660200-72661200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:72660200-72661200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr9:72660200-72661400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr9:72660200-72661400	Enhancers	NHEK	skin
44	chr9:72660200-72661600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr9:72660200-72661600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:72660200-72661600	Enhancers	Esophagus	oesophagus
47	chr9:72660200-72661800	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr9:72660200-72661800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:72660200-72661800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:72660200-72662000	Enhancers	Cortex derived primary cultured neurospheres	brain

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