Variant report

Variant	rs474780
Chromosome Location	chr7:78500250-78500251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1207820	0.88[ASN][1000 genomes]
rs2065198	0.81[ASN][1000 genomes]
rs4730552	0.94[ASN][1000 genomes]
rs488478	0.98[ASN][1000 genomes]
rs491394	0.87[ASN][1000 genomes]
rs508142	0.99[ASN][1000 genomes]
rs508841	0.96[ASN][1000 genomes]
rs514025	0.98[ASN][1000 genomes]
rs514156	0.88[ASN][1000 genomes]
rs514951	0.98[ASN][1000 genomes]
rs516085	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs522601	0.88[ASN][1000 genomes]
rs527231	0.98[ASN][1000 genomes]
rs529602	0.89[ASN][1000 genomes]
rs535451	0.89[ASN][1000 genomes]
rs541737	0.84[ASN][1000 genomes]
rs552822	0.88[ASN][1000 genomes]
rs564808	0.98[ASN][1000 genomes]
rs571376	0.89[ASN][1000 genomes]
rs571502	0.96[ASN][1000 genomes]
rs576744	0.88[ASN][1000 genomes]
rs578047	0.96[ASN][1000 genomes]
rs578326	0.88[ASN][1000 genomes]
rs62467691	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78493000-78502600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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