Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1207820	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12670051	0.88[ASN][1000 genomes]
rs1928911	0.88[ASN][1000 genomes]
rs1928912	0.88[ASN][1000 genomes]
rs2065198	0.85[ASN][1000 genomes]
rs4730552	0.87[ASN][1000 genomes]
rs474780	0.84[ASN][1000 genomes]
rs488478	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs491394	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs508142	0.85[ASN][1000 genomes]
rs508841	0.84[ASN][1000 genomes]
rs514025	0.86[ASN][1000 genomes]
rs514156	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs514951	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs516085	0.93[ASN][1000 genomes]
rs522601	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs527231	0.86[ASN][1000 genomes]
rs529602	0.93[ASN][1000 genomes]
rs535451	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs552822	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs564808	0.86[ASN][1000 genomes]
rs571376	0.93[ASN][1000 genomes]
rs571502	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs576744	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs578047	0.87[ASN][1000 genomes]
rs578326	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6950191	0.81[ASN][1000 genomes]
rs7794352	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024961	chr7:78432257-78483201	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78478600-78484600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:78478600-78484600	Enhancers	HSMM	muscle
3	chr7:78479800-78481000	Enhancers	Brain Angular Gyrus	brain
4	chr7:78479800-78482400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:78480000-78481000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: