Variant report

Variant	rs4730552
Chromosome Location	chr7:78497786-78497787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11770408	0.85[EUR][1000 genomes]
rs1207820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12669340	0.95[CEU][hapmap]
rs1330495	0.96[CEU][hapmap]
rs1330497	0.92[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap]
rs1330498	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1642897	0.92[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap]
rs17454991	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1799011	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs1799013	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs1799014	0.92[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap]
rs1799015	0.92[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap]
rs2065198	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap]
rs472023	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs474780	0.94[ASN][1000 genomes]
rs488478	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs491394	0.89[ASN][1000 genomes]
rs492944	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs504216	0.83[ASW][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap]
rs508142	0.95[ASN][1000 genomes]
rs508789	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs508841	0.94[ASN][1000 genomes]
rs514025	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs514156	1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs514951	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs516085	0.85[ASN][1000 genomes]
rs522601	0.86[ASN][1000 genomes]
rs527231	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs529602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs535355	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs535451	0.91[ASN][1000 genomes]
rs541737	0.87[ASN][1000 genomes]
rs546953	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs550607	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs552822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs563887	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs564808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs571376	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs571502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs573635	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs576744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs578047	0.94[ASN][1000 genomes]
rs578326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs62467691	0.82[ASN][1000 genomes]
rs6950191	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs7794352	0.85[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs961928	0.85[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap]
rs9641491	0.92[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs969699	0.92[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78493000-78502600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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