Variant report

Variant	rs550607
Chromosome Location	chr7:78475144-78475145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1207820	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12670051	0.94[ASN][1000 genomes]
rs1330497	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs1330498	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs1642897	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs17454991	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs1799011	0.84[JPT][hapmap]
rs1799013	0.85[JPT][hapmap]
rs1799014	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs1799015	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs1928911	0.94[ASN][1000 genomes]
rs1928912	0.94[ASN][1000 genomes]
rs2065198	0.92[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs472023	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs4730552	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs474780	0.82[ASN][1000 genomes]
rs488478	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs491394	0.86[CEU][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs492944	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs504216	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs508142	0.83[ASN][1000 genomes]
rs508789	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs508841	0.82[ASN][1000 genomes]
rs514025	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs514156	1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs514951	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs516085	0.93[ASN][1000 genomes]
rs522601	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs527231	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs529602	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs535355	0.82[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap]
rs535451	0.82[AFR][1000 genomes]
rs541737	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs546953	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs552822	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs563887	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs564808	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs571376	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs571502	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs573635	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs576744	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs578047	0.86[ASN][1000 genomes]
rs578326	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6950191	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7794352	0.93[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs961928	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9641491	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs969699	0.85[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024961	chr7:78432257-78483201	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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