Variant report

Variant	rs17454991
Chromosome Location	chr7:78465922-78465923
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11770408	0.92[EUR][1000 genomes]
rs1207820	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs12669340	0.96[CEU][hapmap]
rs12670051	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330495	0.96[CEU][hapmap]
rs1330497	1.00[JPT][hapmap]
rs1330498	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs1799011	0.85[CHB][hapmap]
rs1928911	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928912	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065198	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs472023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4730552	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs488478	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs491394	0.85[ASN][1000 genomes]
rs492944	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs504216	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs508789	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs514025	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs514156	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs514951	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs516085	0.87[ASN][1000 genomes]
rs522601	0.87[ASN][1000 genomes]
rs527231	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs529602	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs535355	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs541737	0.88[ASN][1000 genomes]
rs546953	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs550607	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs552822	0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs563887	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs564808	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs571376	0.85[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs571502	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs573635	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs576744	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs578326	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs6950191	0.89[JPT][hapmap]
rs7794352	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961928	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap]
rs9641491	0.89[JPT][hapmap]
rs969699	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1024961	chr7:78432257-78483201	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv607658	chr7:78456148-78473591	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv971529	chr7:78465381-78467760	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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