Variant report

Variant	rs1799011
Chromosome Location	chr7:78529329-78529330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1207820	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs12705833	0.85[CEU][hapmap]
rs1330497	0.92[CHB][hapmap];0.91[CHD][hapmap]
rs1330498	0.83[CHB][hapmap]
rs1642897	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs17454991	0.85[CHB][hapmap]
rs1799013	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1799014	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap]
rs1799015	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs2065198	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs36200056	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs472023	0.85[CHB][hapmap]
rs4730552	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs488478	0.83[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]
rs492944	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs504216	0.85[CHB][hapmap]
rs508789	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs514025	0.83[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]
rs514156	1.00[CHB][hapmap]
rs514951	0.83[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]
rs527231	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs529602	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs535355	0.83[CHB][hapmap]
rs546953	0.83[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]
rs550607	0.84[JPT][hapmap]
rs552822	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs563887	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs564808	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs571376	0.83[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]
rs571502	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs573635	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs576744	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs578326	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs6950191	0.92[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap]
rs7794352	0.85[CHB][hapmap]
rs961928	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs9641491	0.92[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap]
rs969699	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1799011	SRRM3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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