Variant report

Variant	rs1799015
Chromosome Location	chr7:78525530-78525531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10233975	0.88[CEU][hapmap]
rs11973067	0.87[CEU][hapmap]
rs1207820	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs1330497	1.00[CHB][hapmap];0.97[CHD][hapmap]
rs1330498	0.92[CHB][hapmap]
rs1642897	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs1642906	0.88[CEU][hapmap];0.86[YRI][hapmap]
rs1799008	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs1799011	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs1799013	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1799014	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs1799017	0.88[CEU][hapmap];0.93[YRI][hapmap]
rs1799019	0.88[CEU][hapmap];0.93[YRI][hapmap]
rs2065198	0.92[CHB][hapmap];0.89[CHD][hapmap]
rs2080724	0.92[CEU][hapmap]
rs36200056	0.96[ASN][1000 genomes]
rs4255073	0.88[CEU][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs4730552	0.92[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap]
rs488478	0.92[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap]
rs492944	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs504216	0.80[CHD][hapmap]
rs508789	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs514025	0.92[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap]
rs514156	1.00[CHB][hapmap]
rs514951	0.92[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap]
rs527231	0.92[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap]
rs529602	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs535355	0.92[CHB][hapmap]
rs546953	0.92[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap]
rs550607	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs552822	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs563887	0.92[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap]
rs564808	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs571376	0.92[CHB][hapmap];0.89[CHD][hapmap];0.84[JPT][hapmap]
rs571502	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs573635	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs576744	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs578326	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs6950191	1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap]
rs961928	0.84[JPT][hapmap]
rs9641491	1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap]
rs969699	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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