Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1207820	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs12705833	0.82[CEU][hapmap]
rs1330497	1.00[CHB][hapmap]
rs1330498	0.84[CHB][hapmap]
rs1642897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1799011	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1799014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1799015	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2065198	0.92[CHB][hapmap]
rs36200056	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4730552	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs488478	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs492944	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs508789	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs514025	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs514156	0.91[CHB][hapmap]
rs514951	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs527231	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs529602	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs535355	0.84[CHB][hapmap]
rs546953	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs550607	0.85[JPT][hapmap]
rs552822	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs563887	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs564808	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs571376	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs571502	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs573635	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs576744	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs578326	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs6950191	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs961928	0.84[JPT][hapmap]
rs9641491	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs969699	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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