Variant report
| Variant | rs10233975 |
|---|---|
| Chromosome Location | chr7:78530733-78530734 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TMEM60-2 | chr7:78530591-78530826 | ENSG00000235751.3 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10260996 | 0.81[CHB][hapmap] |
| rs1121066 | 0.82[CHB][hapmap] |
| rs1121068 | 0.82[CHB][hapmap] |
| rs1642906 | 1.00[CEU][hapmap];0.83[CHB][hapmap] |
| rs1799008 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1799015 | 0.88[CEU][hapmap] |
| rs1799017 | 1.00[CEU][hapmap];0.83[CHB][hapmap] |
| rs1799019 | 1.00[CEU][hapmap];0.83[CHB][hapmap] |
| rs1799027 | 0.81[CHB][hapmap] |
| rs2080724 | 0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4255073 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4730561 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs484767 | 0.81[CHB][hapmap] |
| rs5000370 | 0.82[CHB][hapmap] |
| rs508990 | 0.82[CHB][hapmap] |
| rs511615 | 0.81[CHB][hapmap] |
| rs7788393 | 0.83[CEU][hapmap];0.82[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
