Variant report

Variant	rs1121068
Chromosome Location	chr7:78513022-78513023
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10233975	0.82[CHB][hapmap]
rs10260996	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1121066	1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[YRI][hapmap]
rs12669340	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1330495	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1622555	0.97[ASN][1000 genomes]
rs1642906	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1799017	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1799019	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1799024	0.94[JPT][hapmap]
rs1799027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs2080724	0.84[ASN][1000 genomes]
rs4255073	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs4727776	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs474780	0.90[EUR][1000 genomes]
rs484767	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap]
rs5000370	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap]
rs508990	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs509799	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs511615	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs522882	0.98[ASN][1000 genomes]
rs540841	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs544491	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs549261	0.98[ASN][1000 genomes]
rs549336	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs571376	0.82[MKK][hapmap]
rs7788393	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs9641491	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1121068	SRRM3	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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