Variant report

Variant	rs540841
Chromosome Location	chr7:78505248-78505249
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10260996	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1121066	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1121068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11770408	0.80[ASN][1000 genomes]
rs12669340	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1330495	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1622555	0.98[ASN][1000 genomes]
rs1642906	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1799017	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1799019	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1799024	0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs1799027	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2080724	0.83[ASN][1000 genomes]
rs4255073	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs4727776	0.81[JPT][hapmap]
rs484767	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs5000370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs508142	0.93[EUR][1000 genomes]
rs508990	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs509799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs511615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs522882	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs544491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs549261	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549336	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564808	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7788393	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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