Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10260996	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1121066	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1121068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12669340	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1330495	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1622555	0.96[ASN][1000 genomes]
rs1642906	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1799017	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1799019	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1799024	0.80[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs1799027	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2080724	0.81[ASN][1000 genomes]
rs4255073	0.95[CHB][hapmap]
rs4727776	0.81[JPT][hapmap]
rs484767	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5000370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs508142	0.89[EUR][1000 genomes]
rs508990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs509799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs511615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs522882	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs540841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs549261	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs549336	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs564808	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs7788393	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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