Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10260996	0.88[JPT][hapmap]
rs1121066	0.94[JPT][hapmap]
rs1121068	0.94[JPT][hapmap]
rs11770408	0.80[ASN][1000 genomes]
rs12669340	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs1330495	0.89[JPT][hapmap]
rs1622555	0.98[ASN][1000 genomes]
rs1642906	0.82[JPT][hapmap]
rs1799017	0.82[JPT][hapmap]
rs1799019	0.82[JPT][hapmap]
rs1799027	0.94[JPT][hapmap]
rs2080724	0.83[ASN][1000 genomes]
rs4255073	0.82[ASN][1000 genomes]
rs484767	0.94[JPT][hapmap];0.95[YRI][hapmap]
rs5000370	0.94[JPT][hapmap];0.95[YRI][hapmap]
rs508142	0.95[EUR][1000 genomes]
rs508990	0.94[JPT][hapmap];0.86[YRI][hapmap]
rs509799	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs511615	0.94[JPT][hapmap];0.85[YRI][hapmap]
rs522882	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540841	0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs544491	0.80[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs549261	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549336	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564808	0.94[EUR][1000 genomes]
rs7788393	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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