Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10260996	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1121066	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1121068	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11770408	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12669340	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1622555	0.82[ASN][1000 genomes]
rs1642906	0.83[JPT][hapmap]
rs17454991	0.96[CEU][hapmap]
rs1799017	0.83[JPT][hapmap]
rs1799019	0.83[JPT][hapmap]
rs1799024	0.89[JPT][hapmap]
rs1799027	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4255073	0.82[CHB][hapmap]
rs4730552	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs484767	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs5000370	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs508990	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs509799	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs511615	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs522882	0.81[ASN][1000 genomes]
rs540841	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs544491	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs549261	0.81[ASN][1000 genomes]
rs7788393	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024961	chr7:78432257-78483201	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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