Variant report

Variant	rs508990
Chromosome Location	chr7:78504119-78504120
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10233975	0.82[CHB][hapmap]
rs10260996	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1121066	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap]
rs1121068	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs11770408	0.81[ASN][1000 genomes]
rs12669340	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1330495	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1622555	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1642906	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1799017	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1799019	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1799024	0.94[JPT][hapmap];0.86[YRI][hapmap]
rs1799027	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs2080724	0.84[ASN][1000 genomes]
rs4255073	0.95[CHB][hapmap];0.82[CHD][hapmap];0.83[ASN][1000 genomes]
rs4727776	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs484767	1.00[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[YRI][hapmap]
rs5000370	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[YRI][hapmap]
rs504216	0.88[MKK][hapmap]
rs509799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs511615	0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap]
rs522882	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs540841	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs544491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs549261	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs549336	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7788393	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links