Variant report
| Variant | rs12669340 |
|---|---|
| Chromosome Location | chr7:78506474-78506475 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10260996 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs1121066 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1121068 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11770408 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1330495 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap] |
| rs1622555 | 0.99[ASN][1000 genomes] |
| rs1642906 | 0.86[CHB][hapmap];0.87[JPT][hapmap] |
| rs17454991 | 0.96[CEU][hapmap] |
| rs1799017 | 0.86[CHB][hapmap];0.87[JPT][hapmap] |
| rs1799019 | 0.86[CHB][hapmap];0.87[JPT][hapmap] |
| rs1799024 | 0.80[CHB][hapmap];0.94[JPT][hapmap] |
| rs1799027 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2080724 | 0.86[ASN][1000 genomes] |
| rs4255073 | 0.95[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs4727776 | 0.81[JPT][hapmap] |
| rs4730552 | 0.95[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs484767 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5000370 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs508990 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs509799 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs511615 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs522882 | 0.97[ASN][1000 genomes] |
| rs540841 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs544491 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs549261 | 0.97[ASN][1000 genomes] |
| rs549336 | 0.96[ASN][1000 genomes] |
| rs7788393 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
