Variant report

Variant	rs472023
Chromosome Location	chr7:78468373-78468374
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1207820	0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12670051	0.99[ASN][1000 genomes]
rs1330497	1.00[JPT][hapmap]
rs1330498	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17454991	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1799011	0.85[CHB][hapmap]
rs1928911	0.99[ASN][1000 genomes]
rs1928912	0.99[ASN][1000 genomes]
rs2065198	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4730552	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs488478	0.85[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs491394	0.86[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs492944	0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap]
rs504216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs508789	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs514025	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs514156	1.00[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs514951	0.85[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs516085	0.87[ASN][1000 genomes]
rs522601	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs527231	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs529602	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs535355	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs541737	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs546953	0.85[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap]
rs550607	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs552822	0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs563887	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs564808	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs571376	0.85[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs571502	0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs573635	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs576744	0.86[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs578047	0.80[ASN][1000 genomes]
rs578326	0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6950191	0.89[JPT][hapmap]
rs7794352	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs961928	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs9641491	0.89[JPT][hapmap]
rs969699	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1024961	chr7:78432257-78483201	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv607658	chr7:78456148-78473591	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links