Variant report

Variant	rs4748337
Chromosome Location	chr10:5751043-5751044
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10737017	1.00[CEU][hapmap]
rs2669142	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs41290259	1.00[EUR][1000 genomes]
rs55804524	0.92[EUR][1000 genomes]
rs56254903	1.00[EUR][1000 genomes]
rs60525381	0.82[EUR][1000 genomes]
rs7073359	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7076354	0.82[EUR][1000 genomes]
rs72772332	0.91[EUR][1000 genomes]
rs72772333	0.91[EUR][1000 genomes]
rs72772338	1.00[EUR][1000 genomes]
rs72772346	0.82[EUR][1000 genomes]
rs72772350	0.82[EUR][1000 genomes]
rs72772365	0.82[EUR][1000 genomes]
rs72772367	0.82[EUR][1000 genomes]
rs72772373	0.82[EUR][1000 genomes]
rs72772377	0.82[EUR][1000 genomes]
rs72772378	0.82[EUR][1000 genomes]
rs72772401	0.82[EUR][1000 genomes]
rs72774050	1.00[EUR][1000 genomes]
rs72774053	1.00[EUR][1000 genomes]
rs72774058	1.00[EUR][1000 genomes]
rs72774062	1.00[EUR][1000 genomes]
rs72774076	0.91[EUR][1000 genomes]
rs72774079	1.00[EUR][1000 genomes]
rs7915532	0.82[EUR][1000 genomes]
rs7921582	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	esv1796213	chr10:5716555-5766165	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1050663	chr10:5737979-5785918	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv528504	chr10:5739054-5754611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5734800-5763400	Weak transcription	HSMM	muscle
2	chr10:5735200-5767000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:5735400-5761600	Weak transcription	NHEK	skin
4	chr10:5735400-5762000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:5735800-5752800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:5736200-5751600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:5736400-5753000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:5738600-5752400	Weak transcription	Primary B cells from cord blood	blood
9	chr10:5738600-5752800	Weak transcription	Right Atrium	heart
10	chr10:5738600-5769000	Weak transcription	Left Ventricle	heart
11	chr10:5739600-5752800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:5740200-5752000	Weak transcription	Stomach Mucosa	stomach
13	chr10:5740200-5752800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:5740400-5768600	Weak transcription	Psoas Muscle	Psoas
15	chr10:5741400-5760600	Weak transcription	Small Intestine	intestine
16	chr10:5741400-5765600	Weak transcription	A549	lung
17	chr10:5741600-5753400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:5743200-5752400	Weak transcription	Brain Substantia Nigra	brain
19	chr10:5743200-5753600	Weak transcription	HepG2	liver
20	chr10:5743200-5762600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:5744200-5753000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:5745000-5752000	Weak transcription	Liver	Liver
23	chr10:5746800-5752800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr10:5747200-5752000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:5747400-5751600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:5748200-5752400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr10:5748800-5751800	Weak transcription	Dnd41	blood
28	chr10:5749000-5752800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr10:5749000-5753200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:5749200-5752000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:5749400-5752800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:5749600-5753400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:5749600-5753600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:5749800-5752600	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr10:5749800-5753400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr10:5750000-5763400	Weak transcription	K562	blood
37	chr10:5750200-5751800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:5750200-5752400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:5750200-5752400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr10:5750200-5752600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:5750400-5751400	Weak transcription	Primary T cells from cord blood	blood
42	chr10:5750400-5751600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:5750400-5751800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr10:5750800-5751400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr10:5750800-5751800	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links