Variant report

Variant	rs4750022
Chromosome Location	chr10:6191735-6191736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr10:6191605-6191989	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:6189894..6192661-chr10:6244759..6246996,2	MCF-7	breast:
2	chr10:6185856..6188791-chr10:6189568..6196117,9	MCF-7	breast:
3	chr10:6000182..6002722-chr10:6191709..6195207,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RBM17-3	chr10:6191586-6191903	NONHSAT011210

Variant related genes	Relation type
MIR3155A	TF binding region
ENSG00000134470	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10905910	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1409328	0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4237413	0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7097785	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6188000-6193200	Weak transcription	Osteobl	bone
2	chr10:6188200-6193200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:6188200-6193200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:6188400-6192800	Weak transcription	Fetal Heart	heart
5	chr10:6188400-6192800	Weak transcription	Ovary	ovary
6	chr10:6188400-6193000	Weak transcription	Brain Substantia Nigra	brain
7	chr10:6188400-6193000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:6188400-6193000	Weak transcription	HUVEC	blood vessel
9	chr10:6188400-6193200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:6188400-6193200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:6188400-6193200	Weak transcription	A549	lung
12	chr10:6188400-6204000	Weak transcription	HSMMtube	muscle
13	chr10:6188400-6225200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:6188600-6192800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:6188600-6192800	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:6188600-6193000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:6188600-6193000	Weak transcription	Brain Anterior Caudate	brain
18	chr10:6188600-6193000	Weak transcription	Left Ventricle	heart
19	chr10:6188600-6193000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr10:6188600-6193200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:6188600-6193200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:6188800-6192800	Weak transcription	Right Ventricle	heart
23	chr10:6188800-6193000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:6188800-6193000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:6188800-6193000	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:6188800-6193000	Weak transcription	NHLF	lung
27	chr10:6188800-6193200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:6189000-6192800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:6189000-6193000	Weak transcription	Colonic Mucosa	Colon
30	chr10:6189000-6198600	Weak transcription	Hela-S3	cervix
31	chr10:6189200-6192600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:6189200-6193000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:6189200-6193000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr10:6189200-6194200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:6189400-6193000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr10:6189400-6193000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:6189600-6192800	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr10:6189600-6193000	Enhancers	Primary hematopoietic stem cells	blood
39	chr10:6190000-6192800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:6190200-6193200	Weak transcription	Fetal Intestine Small	intestine
41	chr10:6190200-6204400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:6190400-6192000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:6190400-6192800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:6190400-6192800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:6190400-6192800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr10:6190400-6192800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr10:6190400-6192800	Weak transcription	Placenta	Placenta
48	chr10:6190400-6192800	Weak transcription	Lung	lung
49	chr10:6190400-6192800	Weak transcription	Right Atrium	heart
50	chr10:6190400-6193000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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