Variant report

Variant	rs7097785
Chromosome Location	chr10:6193202-6193203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:6193199-6193723	GM12878	blood:	n/a	n/a
2	CTCF	chr10:6193140-6193290	AG04449	skin:	n/a	chr10:6193224-6193245
3	RUNX3	chr10:6192973-6193726	GM12878	blood:	n/a	n/a
4	SPI1	chr10:6192927-6193974	GM12878	blood:	n/a	chr10:6193729-6193736 chr10:6193718-6193727 chr10:6193725-6193738 chr10:6193662-6193671 chr10:6193682-6193695
5	CHD2	chr10:6193071-6193523	GM12878	blood:	n/a	n/a
6	CTCF	chr10:6193070-6193756	H1-hESC	embryonic stem cell:	n/a	chr10:6193548-6193566 chr10:6193224-6193245
7	POLR2A	chr10:6192976-6193838	IMR90	lung:	n/a	n/a
8	STAT5A	chr10:6193172-6193857	GM12878	blood:	n/a	n/a
9	POLR2A	chr10:6192872-6193667	GM12878	blood:	n/a	n/a
10	SIN3AK20	chr10:6193076-6193455	K562	blood:	n/a	n/a
11	TCF12	chr10:6193109-6193418	GM12878	blood:	n/a	n/a
12	SPI1	chr10:6193069-6193807	GM12878	blood:	n/a	chr10:6193729-6193736 chr10:6193718-6193727 chr10:6193725-6193738 chr10:6193662-6193671 chr10:6193682-6193695
13	SPI1	chr10:6193010-6193461	GM12891	blood:	n/a	n/a
14	PML	chr10:6193139-6193933	GM12878	blood:	n/a	n/a
15	RCOR1	chr10:6193163-6193784	K562	blood:	n/a	n/a
16	MXI1	chr10:6193196-6193717	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr10:6193100-6193250	GM06990	blood:	n/a	chr10:6193224-6193245
18	POLR2A	chr10:6193086-6193919	HL-60	blood:	n/a	n/a
19	CTCF	chr10:6193100-6193250	HUVEC	blood vessel:	n/a	chr10:6193224-6193245
20	TBL1XR1	chr10:6193121-6193779	GM12878	blood:	n/a	n/a
21	SMC3	chr10:6192929-6193905	SK-N-SH	brain:	n/a	n/a
22	SMC3	chr10:6193093-6193771	GM12878	blood:	n/a	n/a
23	HCFC1	chr10:6193116-6193649	K562	blood:	n/a	n/a
24	MAZ	chr10:6193101-6193831	K562	blood:	n/a	n/a
25	RAD21	chr10:6193065-6193819	H1-hESC	embryonic stem cell:	n/a	chr10:6193550-6193560 chr10:6193223-6193242 chr10:6193187-6193200 chr10:6193546-6193565
26	SIN3AK20	chr10:6193122-6193606	PFSK-1	brain:	n/a	n/a
27	POLR2A	chr10:6193179-6193319	H1-hESC	embryonic stem cell:	n/a	n/a
28	ZC3H11A	chr10:6193125-6193206	K562	blood:	n/a	n/a
29	MYC	chr10:6193177-6193746	K562	blood:	n/a	n/a
30	CTCF	chr10:6193168-6193737	Spleen_OC	spleen:	n/a	chr10:6193548-6193566 chr10:6193224-6193245
31	TBP	chr10:6193180-6193680	GM12878	blood:	n/a	n/a
32	ETS1	chr10:6193161-6193386	K562	blood:	n/a	chr10:6193264-6193274
33	SPI1	chr10:6193126-6193432	K562	blood:	n/a	n/a
34	ELK1	chr10:6193198-6193618	K562	blood:	n/a	n/a
35	POLR2A	chr10:6193009-6193551	K562	blood:	n/a	n/a
36	MAX	chr10:6193063-6193681	K562	blood:	n/a	n/a
37	RUNX3	chr10:6193063-6193878	GM12878	blood:	n/a	n/a
38	SPI1	chr10:6193183-6193516	HL-60	blood:	n/a	n/a
39	MAZ	chr10:6193090-6193720	GM12878	blood:	n/a	n/a
40	TBP	chr10:6193158-6193626	K562	blood:	n/a	n/a
41	ELF1	chr10:6193021-6193837	K562	blood:	n/a	n/a
42	ELF1	chr10:6193097-6193490	K562	blood:	n/a	n/a
43	CEBPB	chr10:6193172-6193525	K562	blood:	n/a	n/a
44	ZNF143	chr10:6193170-6193820	H1-hESC	embryonic stem cell:	n/a	n/a
45	GABPA	chr10:6193048-6193471	K562	blood:	n/a	n/a
46	POLR2A	chr10:6193123-6193523	GM12878	blood:	n/a	n/a
47	MAX	chr10:6193127-6193767	K562	blood:	n/a	n/a
48	CTCF	chr10:6193060-6193210	HRPEpiC	eye:	n/a	n/a
49	CTCF	chr10:6193051-6193287	GM19238	blood:	n/a	chr10:6193224-6193245
50	STAT1	chr10:6193187-6193720	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:6193155..6193668-chr10:6447562..6448411,2	K562	blood:
2	chr10:6150645..6151549-chr10:6193064..6193796,3	MCF-7	breast:
3	chr10:6185856..6188791-chr10:6189568..6196117,9	MCF-7	breast:
4	chr10:6192230..6193807-chr10:6214197..6216329,2	K562	blood:
5	chr10:6000182..6002722-chr10:6191709..6195207,3	K562	blood:
6	chr10:6150489..6151565-chr10:6193116..6194019,6	K562	blood:

Variant related genes	Relation type
MIR3155A	TF binding region
ENSG00000134470	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10905910	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1409328	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4237413	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4750022	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6188400-6204000	Weak transcription	HSMMtube	muscle
2	chr10:6188400-6225200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:6189000-6198600	Weak transcription	Hela-S3	cervix
4	chr10:6189200-6194200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:6190200-6204400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:6190600-6193400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:6190600-6203600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:6190600-6205200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:6190800-6196800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:6190800-6199800	Weak transcription	HSMM	muscle
11	chr10:6192200-6193800	Enhancers	Pancreas	Pancrea
12	chr10:6192600-6194000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:6192600-6194400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr10:6192600-6194400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr10:6192600-6194600	Enhancers	Spleen	Spleen
16	chr10:6192600-6194800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr10:6192800-6193400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:6192800-6193600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
19	chr10:6192800-6193600	Enhancers	Fetal Heart	heart
20	chr10:6192800-6193600	Enhancers	Right Ventricle	heart
21	chr10:6192800-6193800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:6192800-6193800	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr10:6192800-6193800	Enhancers	Right Atrium	heart
24	chr10:6192800-6194000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:6192800-6194000	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr10:6192800-6194200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:6192800-6194400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:6192800-6194400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:6192800-6194400	Enhancers	Lung	lung
30	chr10:6192800-6194600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:6192800-6194800	Enhancers	Placenta	Placenta
32	chr10:6192800-6197200	Enhancers	Ovary	ovary
33	chr10:6193000-6193400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr10:6193000-6193400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:6193000-6193400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:6193000-6193400	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr10:6193000-6193400	Enhancers	Esophagus	oesophagus
38	chr10:6193000-6193400	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr10:6193000-6193400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr10:6193000-6193400	Enhancers	Stomach Smooth Muscle	stomach
41	chr10:6193000-6193400	Enhancers	HUVEC	blood vessel
42	chr10:6193000-6193600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:6193000-6193600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr10:6193000-6193600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:6193000-6193600	Enhancers	Liver	Liver
46	chr10:6193000-6193600	Active TSS	Colonic Mucosa	Colon
47	chr10:6193000-6193600	Enhancers	Gastric	stomach
48	chr10:6193000-6193600	Enhancers	Psoas Muscle	Psoas
49	chr10:6193000-6193600	Active TSS	Rectal Smooth Muscle	rectum
50	chr10:6193000-6193600	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links