Variant report

Variant	rs4237413
Chromosome Location	chr10:6195243-6195244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6193518..6195996-chr10:6241964..6244930,2	MCF-7	breast:
2	chr10:6185856..6188791-chr10:6189568..6196117,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10795823	1.00[MEX][hapmap]
rs10905908	0.81[AFR][1000 genomes]
rs10905910	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261535	1.00[MEX][hapmap]
rs12722641	1.00[MEX][hapmap]
rs12722698	1.00[MEX][hapmap]
rs1341925	1.00[MEX][hapmap]
rs1409328	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1409329	0.86[YRI][hapmap]
rs4750022	0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7097785	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7901642	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6188400-6204000	Weak transcription	HSMMtube	muscle
2	chr10:6188400-6225200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:6189000-6198600	Weak transcription	Hela-S3	cervix
4	chr10:6190200-6204400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:6190600-6203600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:6190600-6205200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:6190800-6196800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:6190800-6199800	Weak transcription	HSMM	muscle
9	chr10:6192800-6197200	Enhancers	Ovary	ovary
10	chr10:6193000-6195400	Enhancers	Colon Smooth Muscle	Colon
11	chr10:6193000-6196800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:6193400-6205200	Weak transcription	Esophagus	oesophagus
13	chr10:6193600-6195600	Weak transcription	Fetal Heart	heart
14	chr10:6193600-6196400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:6193600-6196400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr10:6193600-6198600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:6193600-6199600	Weak transcription	A549	lung
18	chr10:6193600-6199600	Weak transcription	Osteobl	bone
19	chr10:6193600-6204800	Weak transcription	Gastric	stomach
20	chr10:6193600-6204800	Weak transcription	Right Ventricle	heart
21	chr10:6193600-6205200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:6193600-6205400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr10:6193800-6195400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:6193800-6195400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:6193800-6196200	Enhancers	Adipose Nuclei	Adipose
26	chr10:6193800-6196400	Weak transcription	Fetal Stomach	stomach
27	chr10:6193800-6199200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:6193800-6199600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:6193800-6199600	Weak transcription	NH-A	brain
30	chr10:6193800-6200200	Weak transcription	NHLF	lung
31	chr10:6193800-6204600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:6193800-6204600	Weak transcription	Fetal Intestine Small	intestine
33	chr10:6193800-6204600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:6193800-6204600	Weak transcription	Pancreas	Pancrea
35	chr10:6193800-6204800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:6193800-6205400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:6194000-6195400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:6194000-6195400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:6194000-6199600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:6194000-6199600	Weak transcription	HUVEC	blood vessel
41	chr10:6194000-6199800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:6194000-6204600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr10:6194200-6196200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:6194200-6204400	Weak transcription	Primary T cells from cord blood	blood
45	chr10:6194200-6204600	Weak transcription	Thymus	Thymus
46	chr10:6194400-6195400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr10:6194400-6195400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:6194400-6195400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:6194400-6195800	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr10:6194400-6196200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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