Variant report

Variant	rs10795823
Chromosome Location	chr10:6156118-6156119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6155651..6158898-chr10:6185032..6187374,4	MCF-7	breast:
2	chr10:6149158..6152677-chr10:6155129..6159616,7	K562	blood:
3	chr10:6149017..6157788-chr10:6241652..6246346,17	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PFKFB3-2	chr10:6156110-6157274	NONHSAT011206

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11256269	1.00[AMR][1000 genomes]
rs12250725	1.00[AMR][1000 genomes]
rs12260184	1.00[AMR][1000 genomes]
rs12261085	1.00[AMR][1000 genomes]
rs12261535	1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722641	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12722663	1.00[AMR][1000 genomes]
rs12722667	1.00[AMR][1000 genomes]
rs12722670	1.00[AMR][1000 genomes]
rs12722674	1.00[AMR][1000 genomes]
rs12722698	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1341925	1.00[MEX][hapmap]
rs3891620	1.00[MEX][hapmap]
rs4237413	1.00[MEX][hapmap]
rs4509667	1.00[AMR][1000 genomes]
rs4749956	1.00[AMR][1000 genomes]
rs4749964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4749993	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60269484	1.00[AMR][1000 genomes]
rs6602367	1.00[AMR][1000 genomes]
rs7897471	1.00[AMR][1000 genomes]
rs7901642	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7907241	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7910558	1.00[AMR][1000 genomes]
rs943123	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1040397	chr10:6129759-6158697	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6137400-6158600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:6138000-6159400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:6138200-6159200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr10:6138800-6159200	Strong transcription	Placenta	Placenta
5	chr10:6138800-6159400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:6139000-6156600	Strong transcription	Fetal Muscle Leg	muscle
7	chr10:6139000-6158600	Strong transcription	Fetal Intestine Large	intestine
8	chr10:6139000-6159200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:6139000-6159200	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr10:6139000-6159200	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr10:6139200-6156200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:6139200-6156200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:6139200-6156200	Strong transcription	Osteobl	bone
14	chr10:6139200-6156400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:6139600-6156400	Strong transcription	NH-A	brain
16	chr10:6139800-6156200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:6140000-6162000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:6140400-6161000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:6142000-6156400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:6142200-6158800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr10:6142200-6159400	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:6143200-6159400	Strong transcription	Fetal Muscle Trunk	muscle
23	chr10:6144800-6156400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr10:6145400-6158600	Strong transcription	K562	blood
25	chr10:6145600-6156400	Strong transcription	Fetal Lung	lung
26	chr10:6146000-6156200	Strong transcription	HUVEC	blood vessel
27	chr10:6146400-6156400	Strong transcription	Adipose Nuclei	Adipose
28	chr10:6146800-6156800	Strong transcription	Ovary	ovary
29	chr10:6148000-6157600	Strong transcription	Thymus	Thymus
30	chr10:6148000-6158800	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:6148000-6159000	Strong transcription	Brain Germinal Matrix	brain
32	chr10:6148200-6156200	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr10:6148400-6157600	Strong transcription	Fetal Stomach	stomach
34	chr10:6149000-6157600	Strong transcription	Lung	lung
35	chr10:6149600-6156200	Strong transcription	Brain Anterior Caudate	brain
36	chr10:6149800-6156200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:6149800-6156400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:6149800-6157200	Strong transcription	Fetal Brain Female	brain
39	chr10:6149800-6158600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:6150000-6156400	Strong transcription	HSMMtube	muscle
41	chr10:6150000-6157600	Strong transcription	Colon Smooth Muscle	Colon
42	chr10:6150000-6158400	Strong transcription	Rectal Smooth Muscle	rectum
43	chr10:6150600-6157600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:6151000-6158200	Strong transcription	HMEC	breast
45	chr10:6151000-6158600	Strong transcription	NHEK	skin
46	chr10:6151000-6159200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:6151000-6159200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:6151000-6159400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:6151000-6159600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:6151200-6156400	Strong transcription	Liver	Liver

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