Variant report
| Variant | rs11256269 |
|---|---|
| Chromosome Location | chr10:6037377-6037378 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:6036449..6039219-chr10:6042475..6044251,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10795823 | 1.00[AMR][1000 genomes] |
| rs12250725 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12260184 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12261085 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12261535 | 1.00[AMR][1000 genomes] |
| rs12722641 | 1.00[AMR][1000 genomes] |
| rs12722663 | 1.00[AMR][1000 genomes] |
| rs12722667 | 1.00[AMR][1000 genomes] |
| rs12722670 | 1.00[AMR][1000 genomes] |
| rs12722674 | 1.00[AMR][1000 genomes] |
| rs12722698 | 1.00[AMR][1000 genomes] |
| rs4509667 | 1.00[AMR][1000 genomes] |
| rs4749956 | 1.00[AMR][1000 genomes] |
| rs4749964 | 1.00[AMR][1000 genomes] |
| rs4749993 | 1.00[AMR][1000 genomes] |
| rs60269484 | 1.00[AMR][1000 genomes] |
| rs6602367 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7897471 | 1.00[AMR][1000 genomes] |
| rs7901642 | 1.00[AMR][1000 genomes] |
| rs7907241 | 1.00[AMR][1000 genomes] |
| rs7910558 | 1.00[AMR][1000 genomes] |
| rs943123 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34147 | chr10:5726821-6105717 | Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
| 2 | esv34061 | chr10:5726821-6225187 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 3 | nsv1042286 | chr10:5795129-6578445 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 76 gene(s) | inside rSNPs | diseases |
| 4 | nsv1041261 | chr10:5962635-6052196 | Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 5 | nsv1050983 | chr10:5963921-6052196 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:6026400-6041200 | Weak transcription | Pancreas | Pancrea |
