Variant report

Variant	rs12261085
Chromosome Location	chr10:6051507-6051508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6045037..6047969-chr10:6050387..6052684,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10795823	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs11256269	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11813524	1.00[MEX][hapmap]
rs12243993	0.83[AFR][1000 genomes]
rs12250725	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260184	1.00[AMR][1000 genomes]
rs12261535	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12722641	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12722663	1.00[AMR][1000 genomes]
rs12722667	1.00[AMR][1000 genomes]
rs12722670	1.00[AMR][1000 genomes]
rs12722674	1.00[AMR][1000 genomes]
rs12722698	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs3891620	1.00[MEX][hapmap]
rs4237413	1.00[MEX][hapmap]
rs4509667	1.00[AMR][1000 genomes]
rs4749956	1.00[AMR][1000 genomes]
rs4749964	1.00[AMR][1000 genomes]
rs4749993	1.00[AMR][1000 genomes]
rs60269484	1.00[AMR][1000 genomes]
rs6602367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7897471	1.00[AMR][1000 genomes]
rs7901642	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7907241	1.00[AMR][1000 genomes]
rs7910558	1.00[AMR][1000 genomes]
rs943123	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6044000-6053000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:6044000-6055800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:6048400-6055800	Weak transcription	K562	blood
4	chr10:6049600-6053000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:6050000-6054200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:6050000-6056000	Weak transcription	Primary T cells from cord blood	blood
7	chr10:6051000-6051600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:6051200-6051600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:6051200-6051800	Enhancers	Adipose Nuclei	Adipose
10	chr10:6051200-6051800	Weak transcription	NHLF	lung
11	chr10:6051200-6052000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:6051200-6052200	Enhancers	Osteobl	bone
13	chr10:6051200-6056000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:6051400-6051600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:6051400-6051600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr10:6051400-6052200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:6051400-6052200	Enhancers	Fetal Lung	lung
18	chr10:6051400-6056400	Weak transcription	NHEK	skin

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