Variant report

Variant	rs12722663
Chromosome Location	chr10:6077760-6077761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10795823	1.00[AMR][1000 genomes]
rs11256269	1.00[AMR][1000 genomes]
rs12250725	1.00[AMR][1000 genomes]
rs12260184	1.00[AMR][1000 genomes]
rs12261085	1.00[AMR][1000 genomes]
rs12261535	1.00[AMR][1000 genomes]
rs12722641	1.00[AMR][1000 genomes]
rs12722667	1.00[AMR][1000 genomes]
rs12722670	1.00[AMR][1000 genomes]
rs12722674	1.00[AMR][1000 genomes]
rs12722698	1.00[AMR][1000 genomes]
rs4509667	1.00[AMR][1000 genomes]
rs4749956	1.00[AMR][1000 genomes]
rs4749964	1.00[AMR][1000 genomes]
rs4749993	1.00[AMR][1000 genomes]
rs60269484	1.00[AMR][1000 genomes]
rs6602367	1.00[AMR][1000 genomes]
rs7897471	1.00[AMR][1000 genomes]
rs7901642	1.00[AMR][1000 genomes]
rs7907241	1.00[AMR][1000 genomes]
rs7910558	1.00[AMR][1000 genomes]
rs943123	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv525927	chr10:6059898-6078079	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6066600-6079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:6066800-6078000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:6070200-6077800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:6073000-6077800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:6075000-6078600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:6075400-6079200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:6075800-6078800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:6075800-6079000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:6076000-6079000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr10:6076000-6079600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:6076600-6079200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:6076800-6081000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:6077000-6080600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr10:6077000-6080600	Enhancers	Fetal Thymus	thymus
15	chr10:6077000-6083400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:6077600-6079800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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