Variant report

Variant	rs7907241
Chromosome Location	chr10:6129451-6129452
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:6129391-6129548	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6101613..6103309-chr10:6128330..6130665,2	MCF-7	breast:
2	chr10:6128377..6132115-chr10:6241834..6247197,6	MCF-7	breast:
3	chr10:6121462..6124119-chr10:6127226..6129947,2	MCF-7	breast:
4	chr10:6114985..6117778-chr10:6128679..6130430,2	MCF-7	breast:
5	chr10:5986795..5989162-chr10:6128663..6130950,2	K562	blood:
6	chr10:6018064..6021783-chr10:6129304..6132316,4	K562	blood:
7	chr10:6128980..6130903-chr10:6206068..6209123,3	K562	blood:
8	chr10:6083497..6085137-chr10:6128481..6130673,2	MCF-7	breast:
9	chr10:6129204..6131748-chr10:6244207..6246414,2	K562	blood:
10	chr10:6128513..6130219-chr10:6132306..6134990,2	MCF-7	breast:

No data

Variant related genes	Relation type
RBM17	TF binding region
ENSG00000213994	Chromatin interaction
ENSG00000134470	Chromatin interaction
ENSG00000232807	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10795823	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11256269	1.00[AMR][1000 genomes]
rs12250725	1.00[AMR][1000 genomes]
rs12260184	1.00[AMR][1000 genomes]
rs12261085	1.00[AMR][1000 genomes]
rs12261535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722641	1.00[AMR][1000 genomes]
rs12722663	1.00[AMR][1000 genomes]
rs12722667	1.00[AMR][1000 genomes]
rs12722670	1.00[AMR][1000 genomes]
rs12722674	1.00[AMR][1000 genomes]
rs12722698	1.00[AMR][1000 genomes]
rs4509667	1.00[AMR][1000 genomes]
rs4749956	1.00[AMR][1000 genomes]
rs4749964	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4749993	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60269484	1.00[AMR][1000 genomes]
rs6602367	1.00[AMR][1000 genomes]
rs7897471	1.00[AMR][1000 genomes]
rs7901642	1.00[AMR][1000 genomes]
rs7910558	1.00[AMR][1000 genomes]
rs943123	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6124800-6131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:6126000-6130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:6126000-6131000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:6126200-6131000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:6128200-6129600	Enhancers	Primary B cells from cord blood	blood
6	chr10:6128200-6131000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:6128400-6130400	Weak transcription	Esophagus	oesophagus
8	chr10:6128400-6130400	Weak transcription	HSMM	muscle
9	chr10:6128400-6130400	Weak transcription	NH-A	brain
10	chr10:6128400-6130600	Weak transcription	Psoas Muscle	Psoas
11	chr10:6128600-6130400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:6128600-6130400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:6128600-6130400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:6128600-6130400	Weak transcription	Aorta	Aorta
15	chr10:6128600-6130400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:6128600-6130600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:6128600-6131000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:6128800-6130400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:6128800-6130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:6128800-6130400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:6128800-6130400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:6128800-6130400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:6128800-6130400	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:6128800-6130400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:6128800-6130400	Weak transcription	Fetal Kidney	kidney
26	chr10:6128800-6130400	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:6128800-6130400	Weak transcription	Fetal Stomach	stomach
28	chr10:6128800-6130400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:6128800-6130400	Weak transcription	Stomach Mucosa	stomach
30	chr10:6128800-6130400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:6128800-6130400	Weak transcription	HSMMtube	muscle
32	chr10:6128800-6130400	Weak transcription	NHEK	skin
33	chr10:6128800-6130400	Weak transcription	NHLF	lung
34	chr10:6128800-6130400	Weak transcription	Osteobl	bone
35	chr10:6128800-6130600	Weak transcription	Hela-S3	cervix
36	chr10:6128800-6131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:6128800-6131000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:6129000-6130200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:6129000-6130200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:6129000-6130200	Weak transcription	Brain Substantia Nigra	brain
41	chr10:6129000-6130400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr10:6129000-6130400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr10:6129000-6130400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:6129000-6130400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr10:6129000-6130400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:6129000-6130400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr10:6129000-6130400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:6129000-6130400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr10:6129000-6130400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr10:6129000-6130400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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