Variant report

Variant	rs6602367
Chromosome Location	chr10:6048134-6048135
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10795823	1.00[AMR][1000 genomes]
rs11256269	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243993	0.83[AFR][1000 genomes]
rs12250725	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260184	1.00[AMR][1000 genomes]
rs12261085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261535	1.00[AMR][1000 genomes]
rs12722641	1.00[AMR][1000 genomes]
rs12722663	1.00[AMR][1000 genomes]
rs12722667	1.00[AMR][1000 genomes]
rs12722670	1.00[AMR][1000 genomes]
rs12722674	1.00[AMR][1000 genomes]
rs12722698	1.00[AMR][1000 genomes]
rs4509667	1.00[AMR][1000 genomes]
rs4749956	1.00[AMR][1000 genomes]
rs4749964	1.00[AMR][1000 genomes]
rs4749993	1.00[AMR][1000 genomes]
rs60269484	1.00[AMR][1000 genomes]
rs7897471	1.00[AMR][1000 genomes]
rs7901642	1.00[AMR][1000 genomes]
rs7907241	1.00[AMR][1000 genomes]
rs7910558	1.00[AMR][1000 genomes]
rs943123	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6044000-6053000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:6044000-6055800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:6047400-6048400	Enhancers	K562	blood
4	chr10:6047800-6048200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr10:6047800-6048200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr10:6047800-6048200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:6048000-6048200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:6048000-6048200	Enhancers	Ovary	ovary
9	chr10:6048000-6048200	Bivalent Enhancer	Stomach Smooth Muscle	stomach

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