Variant report

Variant	rs4749956
Chromosome Location	chr10:6126962-6126963
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10795823	1.00[AMR][1000 genomes]
rs11256269	1.00[AMR][1000 genomes]
rs12250725	1.00[AMR][1000 genomes]
rs12260184	1.00[AMR][1000 genomes]
rs12261085	1.00[AMR][1000 genomes]
rs12261535	1.00[AMR][1000 genomes]
rs12722641	1.00[AMR][1000 genomes]
rs12722663	1.00[AMR][1000 genomes]
rs12722667	1.00[AMR][1000 genomes]
rs12722670	1.00[AMR][1000 genomes]
rs12722674	1.00[AMR][1000 genomes]
rs12722698	1.00[AMR][1000 genomes]
rs4509667	1.00[AMR][1000 genomes]
rs4749964	1.00[AMR][1000 genomes]
rs4749993	1.00[AMR][1000 genomes]
rs60269484	1.00[AMR][1000 genomes]
rs6602367	1.00[AMR][1000 genomes]
rs7897471	1.00[AMR][1000 genomes]
rs7901642	1.00[AMR][1000 genomes]
rs7907241	1.00[AMR][1000 genomes]
rs7910558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs943123	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6115600-6127800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr10:6124600-6128200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr10:6124800-6127000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr10:6124800-6128200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:6124800-6128200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:6124800-6131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:6125600-6128200	Weak transcription	Brain Angular Gyrus	brain
8	chr10:6125600-6128200	Weak transcription	Right Ventricle	heart
9	chr10:6125800-6128200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:6125800-6128200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:6125800-6128200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:6126000-6128200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:6126000-6128200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:6126000-6128200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:6126000-6128200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:6126000-6128200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:6126000-6128200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:6126000-6128200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:6126000-6128200	Weak transcription	Gastric	stomach
20	chr10:6126000-6128200	Weak transcription	NH-A	brain
21	chr10:6126000-6128600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr10:6126000-6130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:6126000-6131000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:6126200-6127200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr10:6126200-6128000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:6126200-6128200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:6126200-6128200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:6126200-6128200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:6126200-6128200	Weak transcription	Primary T cells from cord blood	blood
30	chr10:6126200-6128200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:6126200-6128200	Weak transcription	Ovary	ovary
32	chr10:6126200-6128200	Weak transcription	Pancreas	Pancrea
33	chr10:6126200-6128200	Weak transcription	Right Atrium	heart
34	chr10:6126200-6128200	Weak transcription	Small Intestine	intestine
35	chr10:6126200-6128200	Weak transcription	Thymus	Thymus
36	chr10:6126200-6128200	Weak transcription	HUVEC	blood vessel
37	chr10:6126200-6131000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:6126400-6127400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr10:6126400-6128200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:6126400-6128200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:6126400-6128200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr10:6126400-6128200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr10:6126400-6128200	Weak transcription	Adipose Nuclei	Adipose
44	chr10:6126400-6128200	Weak transcription	Fetal Muscle Leg	muscle
45	chr10:6126400-6128200	Weak transcription	Left Ventricle	heart
46	chr10:6126600-6127400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:6126600-6128000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:6126600-6128000	Weak transcription	Fetal Stomach	stomach
49	chr10:6126600-6128200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:6126600-6128200	Enhancers	Primary T helper cells PMA-I stimulated	--

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